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IPTK
IPTK
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A
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B
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C
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E
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F
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G
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H
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I
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L
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M
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O
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P
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T
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U
A
add_base_track() (IPTK.Classes.Annotator.Annotator method)
add_coverage_track() (IPTK.Classes.Annotator.Annotator method)
add_marked_positions_track() (IPTK.Classes.Annotator.Annotator method)
add_segmented_track() (IPTK.Classes.Annotator.Annotator method)
add_stacked_track() (IPTK.Classes.Annotator.Annotator method)
add_to_database() (IPTK.Classes.Database.CellularLocationDB method)
Annotator (class in IPTK.Classes.Annotator)
append_to_calling_string() (in module IPTK.Utils.UtilityFunction)
B
build_sequence_table() (in module IPTK.Utils.UtilityFunction)
C
call_meme() (in module IPTK.IO.MEMEInterface)
CellularLocationDB (class in IPTK.Classes.Database)
check_peptide_made_of_std_20_aa() (in module IPTK.Utils.UtilityFunction)
combine_summary() (in module IPTK.Utils.UtilityFunction)
E
ExpressionProfile (class in IPTK.Classes.Tissue)
F
Features (class in IPTK.Classes.Features)
G
GeneExpressionDB (class in IPTK.Classes.Database)
generate_color_scale() (in module IPTK.Utils.UtilityFunction)
generate_random_name() (in module IPTK.Utils.UtilityFunction)
generate_random_protein_mapping() (in module IPTK.Utils.UtilityFunction)
get_allele_group() (IPTK.Classes.HLAChain.HLAChain method)
(IPTK.Classes.HLAMolecules.HLAMolecule method)
get_alleles() (IPTK.Classes.HLASet.HLASet method)
get_approved_location() (IPTK.Classes.Database.CellularLocationDB method)
get_chain_class() (IPTK.Classes.HLAChain.HLAChain method)
get_chains() (IPTK.Classes.Features.Features method)
get_class() (IPTK.Classes.HLAChain.HLAChain method)
(IPTK.Classes.HLAMolecules.HLAMolecule method)
(IPTK.Classes.HLASet.HLASet method)
get_disulfide_bonds() (IPTK.Classes.Features.Features method)
get_domains() (IPTK.Classes.Features.Features method)
get_experiment_summary() (in module IPTK.Utils.UtilityFunction)
get_expression() (IPTK.Classes.Database.GeneExpressionDB method)
get_expression_in_tissue() (IPTK.Classes.Database.GeneExpressionDB method)
get_expression_profile() (IPTK.Classes.Tissue.Tissue method)
get_figure() (IPTK.Classes.Annotator.Annotator method)
get_gene() (IPTK.Classes.HLAChain.HLAChain method)
(IPTK.Classes.HLAMolecules.HLAMolecule method)
get_gene_id_expression() (IPTK.Classes.Tissue.ExpressionProfile method)
get_gene_name_expression() (IPTK.Classes.Tissue.ExpressionProfile method)
get_gene_names() (IPTK.Classes.Database.CellularLocationDB method)
(IPTK.Classes.Database.GeneExpressionDB method)
get_genes() (IPTK.Classes.Database.CellularLocationDB method)
(IPTK.Classes.Database.GeneExpressionDB method)
get_go_names() (IPTK.Classes.Database.CellularLocationDB method)
get_hla_count() (IPTK.Classes.HLASet.HLASet method)
get_idx_peptide_in_sequence_table() (in module IPTK.Utils.UtilityFunction)
get_main_location() (IPTK.Classes.Database.CellularLocationDB method)
get_meme_help() (in module IPTK.IO.MEMEInterface)
get_meta_data() (IPTK.Classes.Proband.Proband method)
get_name() (IPTK.Classes.HLAChain.HLAChain method)
(IPTK.Classes.HLAMolecules.HLAMolecule method)
(IPTK.Classes.Proband.Proband method)
(IPTK.Classes.Tissue.ExpressionProfile method)
(IPTK.Classes.Tissue.Tissue method)
get_names() (IPTK.Classes.HLASet.HLASet method)
get_num_transmembrane_regions() (IPTK.Classes.Features.Features method)
get_number_chains() (IPTK.Classes.Features.Features method)
get_number_disulfide_bonds() (IPTK.Classes.Features.Features method)
get_number_domains() (IPTK.Classes.Features.Features method)
get_number_glycosylation_sites() (IPTK.Classes.Features.Features method)
get_number_modifications() (IPTK.Classes.Features.Features method)
get_number_protein_per_organism() (IPTK.Classes.Database.OrganismDB method)
get_number_PTMs() (IPTK.Classes.Features.Features method)
get_number_sequence_variants() (IPTK.Classes.Features.Features method)
get_number_splice_variants() (IPTK.Classes.Features.Features method)
get_org() (IPTK.Classes.Database.OrganismDB method)
get_protein_group() (IPTK.Classes.HLAChain.HLAChain method)
(IPTK.Classes.HLAMolecules.HLAMolecule method)
get_PTMs() (IPTK.Classes.Features.Features method)
get_PTMs_glycosylation() (IPTK.Classes.Features.Features method)
get_PTMs_modifications() (IPTK.Classes.Features.Features method)
get_seq() (IPTK.Classes.Database.SeqDB method)
get_sequence_variants() (IPTK.Classes.Features.Features method)
get_signal_peptide_index() (IPTK.Classes.Features.Features method)
get_splice_variants() (IPTK.Classes.Features.Features method)
get_subCellular_locations() (IPTK.Classes.Tissue.Tissue method)
get_table() (IPTK.Classes.Database.CellularLocationDB method)
(IPTK.Classes.Database.GeneExpressionDB method)
(IPTK.Classes.Tissue.ExpressionProfile method)
get_tissues() (IPTK.Classes.Database.GeneExpressionDB method)
get_transmembrane_regions() (IPTK.Classes.Features.Features method)
get_unique_orgs() (IPTK.Classes.Database.OrganismDB method)
H
has_allele() (IPTK.Classes.HLASet.HLASet method)
has_allele_group() (IPTK.Classes.HLASet.HLASet method)
has_chains() (IPTK.Classes.Features.Features method)
has_disulfide_bond() (IPTK.Classes.Features.Features method)
has_domains() (IPTK.Classes.Features.Features method)
has_gene() (IPTK.Classes.HLASet.HLASet method)
has_glycosylation_site() (IPTK.Classes.Features.Features method)
has_protein_group() (IPTK.Classes.HLASet.HLASet method)
has_PTMs() (IPTK.Classes.Features.Features method)
has_sequence() (IPTK.Classes.Database.SeqDB method)
has_sequence_variants() (IPTK.Classes.Features.Features method)
has_signal_peptide() (IPTK.Classes.Features.Features method)
has_site_modifications() (IPTK.Classes.Features.Features method)
has_splice_variants() (IPTK.Classes.Features.Features method)
has_transmembrane_domains() (IPTK.Classes.Features.Features method)
HLAChain (class in IPTK.Classes.HLAChain)
HLAMolecule (class in IPTK.Classes.HLAMolecules)
HLASet (class in IPTK.Classes.HLASet)
I
IPTK
module
IPTK.Analysis
module
IPTK.Classes
module
IPTK.Classes.Annotator
module
IPTK.Classes.Database
module
IPTK.Classes.Features
module
IPTK.Classes.HLAChain
module
IPTK.Classes.HLAMolecules
module
IPTK.Classes.HLASet
module
IPTK.Classes.Proband
module
IPTK.Classes.Tissue
module
IPTK.IO
module
IPTK.IO.MEMEInterface
module
IPTK.Utils
module
IPTK.Utils.Mapping
module
IPTK.Utils.Types
module
IPTK.Utils.UtilityFunction
module
IPTK.Visualization
module
is_meme_callable() (in module IPTK.IO.MEMEInterface)
L
load_3d_figure() (in module IPTK.Utils.UtilityFunction)
M
map_from_uniprot_gene() (in module IPTK.Utils.Mapping)
map_from_uniprot_pdb() (in module IPTK.Utils.Mapping)
map_from_uniprot_to_Entrez_Gene() (in module IPTK.Utils.Mapping)
module
IPTK
IPTK.Analysis
IPTK.Classes
IPTK.Classes.Annotator
IPTK.Classes.Database
IPTK.Classes.Features
IPTK.Classes.HLAChain
IPTK.Classes.HLAMolecules
IPTK.Classes.HLASet
IPTK.Classes.Proband
IPTK.Classes.Tissue
IPTK.IO
IPTK.IO.MEMEInterface
IPTK.Utils
IPTK.Utils.Mapping
IPTK.Utils.Types
IPTK.Utils.UtilityFunction
IPTK.Visualization
O
OrganismDB (class in IPTK.Classes.Database)
P
pad_mapped_proteins() (in module IPTK.Utils.UtilityFunction)
Proband (class in IPTK.Classes.Proband)
S
save_3d_figure() (in module IPTK.Utils.UtilityFunction)
save_fig() (IPTK.Classes.Annotator.Annotator method)
SeqDB (class in IPTK.Classes.Database)
simulate_protein_binary_represention() (in module IPTK.Utils.UtilityFunction)
simulate_protein_representation() (in module IPTK.Utils.UtilityFunction)
summary() (IPTK.Classes.Features.Features method)
T
Tissue (class in IPTK.Classes.Tissue)
U
update_info() (IPTK.Classes.Proband.Proband method)
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